EGSEAdata

This is the released version of EGSEAdata; for the devel version, see EGSEAdata.

Gene set collections for the EGSEA package

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DOI: 10.18129/B9.bioc.EGSEAdata

Bioconductor version: Release (3.22)

This package includes gene set collections that are used for the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing. It includes Human and Mouse versions of the MSidDB (Subramanian, et al. (2005) PNAS, 102(43):15545-15550) and GeneSetDB (Araki, et al. (2012) FEBS Open Bio, 2:76-82) collections.

Author: Monther Alhamdoosh, Yifang Hu and Gordon K. Smyth

Maintainer: Monther Alhamdoosh <m.hamdoosh at gmail.com>

Citation (from within R, enter citation("EGSEAdata")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("EGSEAdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, Rattus_norvegicus_Data

Version 1.38.0

License file LICENSE

Depends R (>= 3.4)

Imports

System Requirements

URL

Suggests EGSEA

Linking To

Enhances

Depends On Me

Imports Me EGSEA

Suggests Me

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EGSEAdata_1.38.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/EGSEAdata

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EGSEAdata

Package Short Url https://bioconductor.org/packages/EGSEAdata/

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