GeuvadisTranscriptExpr

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GeuvadisTranscriptExpr.

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

DOI: 10.18129/B9.bioc.GeuvadisTranscriptExpr

Bioconductor version: 3.9

Provides transcript expression and bi-allelic genotypes corresponding to the chromosome 19 for CEU individuals from the GEUVADIS project, Lappalainen et al.

Author: Malgorzata Nowicka [aut, cre]

Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>

Citation (from within R, enter citation("GeuvadisTranscriptExpr")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GeuvadisTranscriptExpr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeuvadisTranscriptExpr")

Preprocessing and preparation of transcript expression and genotypes from the GEUVADIS project for sQTL analysis PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExpressionData, Genome, Homo_sapiens_Data, RNASeqData, SNPData, SequencingData

Version 1.12.0

License GPL (>= 3)

Depends R (>= 3.3.0)

Imports

System Requirements

URL

Suggests limma, rtracklayer, GenomicRanges, Rsamtools, VariantAnnotation, tools, BiocStyle, knitr, testthat

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me DRIMSeq

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeuvadisTranscriptExpr_1.12.0.tar.gz

Windows Binary

Mac OS X 10.11 (El Capitan)

Source Repository git clone https://git.bioconductor.org/packages/GeuvadisTranscriptExpr

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeuvadisTranscriptExpr

Package Short Url https://bioconductor.org/packages/GeuvadisTranscriptExpr/

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