TurboNorm

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TurboNorm.

A fast scatterplot smoother suitable for microarray normalization

Bioconductor version: 3.9

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Author: Maarten van Iterson and Chantal van Leeuwen

Maintainer: Maarten van Iterson <mviterson at gmail.com>

Citation (from within R, enter citation("TurboNorm")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TurboNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TurboNorm")

TurboNorm Overview PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CpGIsland, DNAMethylation, MethylationArray, Microarray, Normalization, OneChannel, Preprocessing, Software, TwoChannel

Version 1.32.0

In Bioconductor since BioC 2.8 (R-2.13) (13 years)

License LGPL

Depends R (>= 2.12.0), convert, limma(>= 1.7.0), marray

Imports stats, grDevices, affy, lattice

System Requirements

URL http://www.humgen.nl/MicroarrayAnalysisGroup.html

Suggests BiocStyle, affydata

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TurboNorm_1.32.0.tar.gz

Windows Binary TurboNorm_1.32.0.zip

Mac OS X 10.11 (El Capitan) TurboNorm_1.32.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/TurboNorm

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TurboNorm

Bioc Package Browser https://code.bioconductor.org/browse/TurboNorm/

Package Short Url https://bioconductor.org/packages/TurboNorm/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.9 Source Archive