RedeR

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RedeR.

Interactive visualization and manipulation of nested networks

Bioconductor version: 3.9

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Citation (from within R, enter citation("RedeR")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("RedeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedeR")

RedeR: hierarchical network representation HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization

Version 1.32.2

In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)

License GPL (>= 2)

Depends R (>= 3.3.3), methods

Imports igraph

System Requirements Java Runtime Environment (>= 6)

URL http://genomebiology.com/2012/13/4/R29

Suggests pvclust, BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me Fletcher2013b

Imports Me Mulder2012, PANR, RTN, transcriptogramer

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RedeR_1.32.2.tar.gz

Windows Binary RedeR_1.32.2.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) RedeR_1.32.2.tgz

Source Repository git clone https://git.bioconductor.org/packages/RedeR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RedeR

Bioc Package Browser https://code.bioconductor.org/browse/RedeR/

Package Short Url https://bioconductor.org/packages/RedeR/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.9 Source Archive