MTseeker

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MTseekerData.

Bioconductor Tools for Human Mitochondrial Variant Analysis

DOI: 10.18129/B9.bioc.MTseeker

Bioconductor version: 3.9

Variant analysis tools for mitochondrial genetics.

Author: Tim Triche [cre, aut], Noor Sohail [aut], Ben Johnson [aut], Tim Vickers [ctb], Azif Zubair [ctb]

Maintainer: Tim Triche <tim.triche at gmail.com>

Citation (from within R, enter citation("MTseeker")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MTseeker")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MTseeker")

MTseeker example HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Genetics, Metabolomics, Software, VariantAnnotation

Version 1.2.0

In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)

License GPL-3

Depends viridis, S4Vectors, GenomeInfoDb, GenomicAlignments, VariantAnnotation

Imports xml2, utils, gmapR, methods, IRanges, Biobase, circlize, jsonlite, graphics, Rsamtools, grDevices, Biostrings, rtracklayer, VariantTools, Homo.sapiens, BiocGenerics, GenomicRanges, GenomicFeatures, SummarizedExperiment

System Requirements

URL

Suggests MTseekerData, BiocStyle, rmarkdown, ggthemes, ggplot2, pkgdown, knitr, rsvg

Linking To

Enhances

Depends On Me

Imports Me MTseekerData

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MTseeker_1.2.0.tar.gz

Windows Binary

Mac OS X 10.11 (El Capitan) MTseeker_1.2.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MTseeker

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MTseeker

Bioc Package Browser https://code.bioconductor.org/browse/MTseeker/

Package Short Url https://bioconductor.org/packages/MTseeker/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.9 Source Archive