BiocCheck

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BiocCheck.

Bioconductor-specific package checks

Bioconductor version: 3.9

Executes Bioconductor-specific package checks.

Author: Bioconductor Package Maintainer [aut, cre], Lori Shepherd [ctb], Daniel von Twisk [ctb], Kevin Rue [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BiocCheck")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BiocCheck")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocCheck")

BiocCheck: Ensuring Bioconductor package guidelines HTML R Script

Reference Manual PDF

NEWS Text

Version 1.20.0

In Bioconductor since BioC 2.14 (R-3.1) (10 years)

License Artistic-2.0

Depends R (>= 3.5.0)

Imports biocViews(>= 1.33.7), BiocManager, stringdist, graph, httr, tools, optparse, codetools, methods, utils, knitr

System Requirements

Suggests RUnit, BiocGenerics, Biobase, RJSONIO, rmarkdown, devtools (>= 1.4.1), usethis, BiocStyle

Linking To

Enhances codetoolsBioC

Depends On Me

Imports Me ExperimentHubData

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Windows Binary BiocCheck_1.20.0.zip

Mac OS X 10.11 (El Capitan) BiocCheck_1.20.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/BiocCheck

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocCheck

Package Downloads Report Download Stats

Old Source Packages for BioC 3.9 Source Archive