PCHiCdata

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see PCHiCdata.

Promoter Capture Hi-C data

Bioconductor version: 3.8

Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.

Author: Paula Freire-Pritchett, Jonathan Cairns, Steven Wingett, Mikhail Spivakov

Maintainer: Paula Freire-Pritchett <paula.freire-pritchett at babraham.ac.uk>

Citation (from within R, enter citation("PCHiCdata")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("PCHiCdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PCHiCdata")

PCHiCdata Vignette HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, SequencingData, StemCell

Version 1.10.0

License Artistic-2.0

Depends R (>= 3.2), Chicago

Imports

System Requirements

URL

Suggests testthat, BiocStyle, knitr

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me Chicago

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PCHiCdata_1.10.0.tar.gz

Windows Binary

Mac OS X 10.11 (El Capitan)

Source Repository git clone https://git.bioconductor.org/packages/PCHiCdata

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PCHiCdata

Package Short Url https://bioconductor.org/packages/PCHiCdata/

Package Downloads Report Download Stats