BSgenome.Mmusculus.UCSC.mm10.masked

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Mmusculus.UCSC.mm10.masked.

Full masked genome sequences for Mus musculus (UCSC version mm10)

DOI: 10.18129/B9.bioc.BSgenome.Mmusculus.UCSC.mm10.masked

Bioconductor version: 3.8

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, Dec. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm10, except that each of them has the 2 following masks on top: (1) the mask of assembly gaps (AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB mask).

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Mmusculus.UCSC.mm10.masked")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BSgenome.Mmusculus.UCSC.mm10.masked")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, BSgenome, Genetics, Mus_musculus

Version 1.3.99

License Artistic-2.0

Depends BSgenome(>= 1.31.8), BSgenome.Mmusculus.UCSC.mm10

Imports BSgenome, BSgenome.Mmusculus.UCSC.mm10

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Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Mmusculus.UCSC.mm10.masked_1.3.99.tar.gz

Windows Binary

Mac OS X 10.11 (El Capitan)

Package Short Url https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10.masked/

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