quantsmooth

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see quantsmooth.

Quantile smoothing and genomic visualization of array data

Bioconductor version: 3.8

Implements quantile smoothing as introduced in: Quantile smoothing of array CGH data; Eilers PH, de Menezes RX; Bioinformatics. 2005 Apr 1;21(7):1146-53.

Author: Jan Oosting, Paul Eilers, Renee Menezes

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Citation (from within R, enter citation("quantsmooth")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("quantsmooth")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("quantsmooth")

quantsmooth PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CopyNumberVariation, Software, Visualization

Version 1.48.0

In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)

License GPL-2

Depends R (>= 2.10.0), quantreg, grid

Imports

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me beadarraySNP

Imports Me GWASTools, SIM

Suggests Me PREDA

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package quantsmooth_1.48.0.tar.gz

Windows Binary quantsmooth_1.48.0.zip

Mac OS X 10.11 (El Capitan) quantsmooth_1.48.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/quantsmooth

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/quantsmooth

Bioc Package Browser https://code.bioconductor.org/browse/quantsmooth/

Package Short Url https://bioconductor.org/packages/quantsmooth/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.8 Source Archive