h5vc

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see h5vc.

Managing alignment tallies using a hdf5 backend

Bioconductor version: 3.8

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.

Author: Paul Theodor Pyl

Maintainer: Paul Theodor Pyl <paul.theodor.pyl at gmail.com>

Citation (from within R, enter citation("h5vc")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("h5vc")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("h5vc")

Building a minimal genome browser with h5vc and shiny HTML R Script

h5vc -- Tour HTML R Script

Reference Manual PDF

biocViews Software

Version 2.16.0

In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)

License GPL (>= 3)

Depends grid, gridExtra, ggplot2

System Requirements

URL

Linking To Rsamtools

Enhances

Depends On Me

Imports Me

Suggests Me h5vcData

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package h5vc_2.16.0.tar.gz

Windows Binary h5vc_2.16.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) h5vc_2.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/h5vc

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/h5vc

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Old Source Packages for BioC 3.8 Source Archive