graph
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see graph.
graph: A package to handle graph data structures
Bioconductor version: 3.8
A package that implements some simple graph handling capabilities.
Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("graph")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("graph")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("graph") Reference Manual
PDF
Details
biocViews
GraphAndNetwork, Software
Version
1.60.0
In Bioconductor since
BioC 1.6 (R-2.1) or earlier (> 19 years)
License
Artistic-2.0
Depends
R (>= 2.10), methods, BiocGenerics(>= 0.13.11)
Imports
stats, stats4, utils
System Requirements
See More
Suggests
SparseM (>= 0.36), XML, RBGL, RUnit, cluster
Linking To
Enhances
Rgraphviz
Depends On Me
apComplex, biocGraph, BioMVCClass, BioNet, BLMA, CellNOptR, clipper, CNORfeeder, EnrichmentBrowser, FEM, flowMerge, gaggle, gaucho, GOFunction, GOstats, GraphAT, GRridge, GSEABase, hypergraph, keggorthology, maigesPack, MineICA, NetSAM, pathRender, Pigengene, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCyjs, RDAVIDWebService, Rgraphviz, ROntoTools, RpsiXML, SNAData, SRAdb, topGO, vtpnet, yeastExpData
Imports Me
alpine, AnalysisPageServer, BgeeDB, BiocCheck, biocGraph, biocViews, CAMERA, Category, categoryCompare, chimeraviz, ChIPpeakAnno, CHRONOS, CytoML, DAPAR, DEGraph, DEsubs, epiNEM, EventPointer, ExperimentHubData, FEM, flowCL, flowClust, flowCore, flowUtils, flowWorkspace, gage, GeneNetworkBuilder, GOFunction, GOSim, GraphAT, graphite, gwascat, HTSanalyzeR, hyperdraw, KEGGgraph, keggorthology, keggorthology, MIGSA, mirIntegrator, NCIgraph, NeighborNet, nem, netresponse, OncoSimulR, openCyto, OrganismDbi, pathview, PCpheno, PhenStat, pkgDepTools, ppiStats, pwOmics, qpgraph, RamiGO, RchyOptimyx, RCy3, RGraph2js, rsbml, Rtreemix, signet, SplicingGraphs, Streamer, ToPASeq, trackViewer, VariantFiltering
Suggests Me
AnnotationDbi, BiocCaseStudies, DEGraph, EBcoexpress, ecolitk, GeneAnswers, KEGGlincs, MmPalateMiRNA, netbenchmark, NetPathMiner, rBiopaxParser, rTRM, S4Vectors, SPIA, VariantTools
Links To Me
Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
graph_1.60.0.tar.gz
Windows Binary
graph_1.60.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)
graph_1.60.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/graph
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/graph
Bioc Package Browser
https://code.bioconductor.org/browse/graph/
Package Short Url
https://bioconductor.org/packages/graph/
Package Downloads Report
Download Stats
Old Source Packages for BioC 3.8
Source Archive