fCCAC
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see fCCAC.
functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
Bioconductor version: 3.8
An application of functional canonical correlation analysis to assess covariance of nucleic acid sequencing datasets such as chromatin immunoprecipitation followed by deep sequencing (ChIP-seq). The package can be used as well with other types of sequencing data such as neMeRIP-seq (PMID: 29489750) or with single cell RNA-seq or epigenome data provided in bigWig format.
Author: Pedro Madrigal <bioinformatics.engineer at gmail.com>
Maintainer: Pedro Madrigal <bioinformatics.engineer at gmail.com>
citation("fCCAC")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("fCCAC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("fCCAC")
Details
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Follow Installation instructions to use this package in your R session.