chipseq

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see chipseq.

chipseq: A package for analyzing chipseq data

Bioconductor version: 3.8

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("chipseq")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("chipseq")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chipseq")

A Sample ChIP-Seq analysis workflow PDF R Script

Reference Manual PDF

Version 1.32.0

In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)

License Artistic-2.0

Depends R (>= 2.10), methods, BiocGenerics(>= 0.1.0), S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), GenomicRanges(>= 1.31.8), ShortRead

Imports methods, stats, lattice, BiocGenerics, IRanges, GenomicRanges, ShortRead

System Requirements

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Suggests Me GenoGAM, ggbio

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Follow Installation instructions to use this package in your R session.

Source Package chipseq_1.32.0.tar.gz

Windows Binary chipseq_1.32.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) chipseq_1.32.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/chipseq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/chipseq

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Old Source Packages for BioC 3.8 Source Archive