XINA

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see XINA.

Multiplexes isobaric mass tagged-based kinetics data for network analysis

Bioconductor version: 3.8

An intuitive R package simplifies network analyses output from multiplexed high-dimensional proteomics/trascriptomics kinetics data.

Author: Lee, Lang Ho and Singh, Sasha A.

Maintainer: Lang Ho Lee <langholee at gmail.com> and Sasha A. Singh <sasingh at bwh.harvard.edu>

Citation (from within R, enter citation("XINA")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("XINA")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XINA")

xina_user_code HTML R Script

Reference Manual PDF

NEWS Text

Version 1.0.1

In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)

License GPL-3

Depends R (>= 3.5), Biobase

Imports mclust, plyr, alluvial, ggplot2, igraph, gridExtra, tools, grDevices, graphics, utils, STRINGdb

System Requirements

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Suggests knitr, rmarkdown

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Follow Installation instructions to use this package in your R session.

Source Package XINA_1.0.1.tar.gz

Windows Binary XINA_1.0.1.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) XINA_1.0.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/XINA

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/XINA

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Old Source Packages for BioC 3.8 Source Archive