TnT

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see TnT.

Interactive Visualization for Genomic Features

Bioconductor version: 3.8

A R interface to the TnT javascript library (https://github.com/ tntvis) to provide interactive and flexible visualization of track-based genomic data.

Author: Jialin Ma [cre, aut], Miguel Pignatelli [aut], Toby Hocking [aut]

Maintainer: Jialin Ma <marlin- at gmx.cn>

Citation (from within R, enter citation("TnT")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TnT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TnT")

Introduction to TnT HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software, Visualization

Version 1.4.0

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License AGPL-3

Depends R (>= 3.4), GenomicRanges

Imports methods, stats, utils, grDevices, htmlwidgets, jsonlite, data.table, Biobase, GenomeInfoDb, IRanges, S4Vectors, knitr

System Requirements

URL https://github.com/Marlin-Na/TnT

Bug Reports https://github.com/Marlin-Na/TnT/issues

Suggests GenomicFeatures, shiny, BiocManager, rmarkdown, testthat

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TnT_1.4.0.tar.gz

Windows Binary TnT_1.4.0.zip

Mac OS X 10.11 (El Capitan) TnT_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/TnT

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TnT

Bioc Package Browser https://code.bioconductor.org/browse/TnT/

Package Short Url https://bioconductor.org/packages/TnT/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.8 Source Archive