ScISI

This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ScISI.

In Silico Interactome

DOI: 10.18129/B9.bioc.ScISI

Bioconductor version: 3.8

Package to create In Silico Interactomes

Author: Tony Chiang <tchiang at fhcrc.org>

Maintainer: Tony Chiang <tchiang at fhcrc.org>

Citation (from within R, enter citation("ScISI")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ScISI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ScISI")

ScISI Vignette PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DecisionTree, GraphAndNetwork, NetworkInference, Proteomics, Software

Version 1.54.0

In Bioconductor since BioC 1.8 (R-2.3) (18 years)

License LGPL

Depends R (>= 2.10), GO.db, RpsiXML, annotate, apComplex

Imports AnnotationDbi, GO.db, RpsiXML, annotate, methods, org.Sc.sgd.db, utils

System Requirements

URL

Suggests ppiData, xtable

Linking To

Enhances

Depends On Me PCpheno, ppiStats, SLGI

Imports Me PCpheno, SLGI

Suggests Me RpsiXML

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ScISI_1.54.0.tar.gz

Windows Binary ScISI_1.54.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) ScISI_1.54.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ScISI

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ScISI

Bioc Package Browser https://code.bioconductor.org/browse/ScISI/

Package Short Url https://bioconductor.org/packages/ScISI/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.8 Source Archive