MiRaGE
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MiRaGE.
MiRNA Ranking by Gene Expression
Bioconductor version: 3.8
The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.
Author: Y-h. Taguchi <tag at granular.com>
Maintainer: Y-h. Taguchi <tag at granular.com>
Citation (from within R, enter
citation("MiRaGE")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MiRaGE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MiRaGE") Reference Manual
PDF
Details
Version
1.24.1
In Bioconductor since
BioC 2.11 (R-2.15) (11.5 years)
License
GPL
Depends
R (>= 3.1.0), Biobase(>= 2.23.3)
System Requirements
See More
Suggests
seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData
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Build Report
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Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
MiRaGE_1.24.1.tar.gz
Windows Binary
MiRaGE_1.24.1.zip
Mac OS X 10.11 (El Capitan)
MiRaGE_1.24.1.tgz
Source Repository
git clone https://git.bioconductor.org/packages/MiRaGE
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/MiRaGE
Bioc Package Browser
https://code.bioconductor.org/browse/MiRaGE/
Package Short Url
https://bioconductor.org/packages/MiRaGE/
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