GMRP

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GMRP.

GWAS-based Mendelian Randomization and Path Analyses

Bioconductor version: 3.8

Perform Mendelian randomization analysis of multiple SNPs to determine risk factors causing disease of study and to exclude confounding variabels and perform path analysis to construct path of risk factors to the disease.

Author: Yuan-De Tan

Maintainer: Yuan-De Tan <tanyuande at gmail.com>

Citation (from within R, enter citation("GMRP")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GMRP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GMRP")

Causal Effect Analysis of Risk Factors for Disease with the "GMRP" package PDF R Script

GMRP-manual.pdf PDF

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Regression, SNP, Sequencing, Software

Version 1.10.1

In Bioconductor since BioC 3.3 (R-3.3) (8 years)

License GPL (>= 2)

Depends R (>= 3.3.0), stats, utils, graphics, grDevices, diagram, plotrix, base, GenomicRanges

Imports

System Requirements

URL

Suggests BiocStyle, BiocGenerics

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Depends On Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GMRP_1.10.1.tar.gz

Windows Binary GMRP_1.10.1.zip

Mac OS X 10.11 (El Capitan) GMRP_1.10.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/GMRP

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GMRP

Bioc Package Browser https://code.bioconductor.org/browse/GMRP/

Package Short Url https://bioconductor.org/packages/GMRP/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.8 Source Archive