GENIE3

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GENIE3.

GEne Network Inference with Ensemble of trees

Bioconductor version: 3.8

This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.

Author: Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts

Maintainer: Van Anh Huynh-Thu <vahuynh at ulg.ac.be>

Citation (from within R, enter citation("GENIE3")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GENIE3")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GENIE3")

GENIE3 HTML R Script

Reference Manual PDF

NEWS Text

Version 1.4.3

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License GPL (>= 2)

Depends

Imports stats, reshape2

System Requirements

URL

Suggests knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods

Linking To

Enhances

Depends On Me

Imports Me netbenchmark

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package GENIE3_1.4.3.tar.gz

Windows Binary GENIE3_1.4.3.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) GENIE3_1.4.3.tgz

Source Repository git clone https://git.bioconductor.org/packages/GENIE3

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GENIE3

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Old Source Packages for BioC 3.8 Source Archive