EGAD

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see EGAD.

Extending guilt by association by degree

Bioconductor version: 3.8

The package implements a series of highly efficient tools to calculate functional properties of networks based on guilt by association methods.

Author: Sara Ballouz [aut, cre], Melanie Weber [aut, ctb], Paul Pavlidis [aut], Jesse Gillis [aut, ctb]

Maintainer: Sara Ballouz <sballouz at cshl.edu>

Citation (from within R, enter citation("EGAD")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("EGAD")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EGAD")

"EGAD user guide" PDF R Script

Reference Manual PDF

NEWS Text

Version 1.10.0

In Bioconductor since BioC 3.3 (R-3.3) (8 years)

License GPL-2

Depends R (>= 3.3)

Imports gplots, Biobase, GEOquery, limma, arrayQualityMetrics, impute, RColorBrewer, zoo, igraph, plyr, Matrix, MASS, RCurl, affy

System Requirements

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Suggests knitr, rmarkdown, testthat

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Follow Installation instructions to use this package in your R session.

Source Package EGAD_1.10.0.tar.gz

Windows Binary EGAD_1.10.0.zip

Mac OS X 10.11 (El Capitan) EGAD_1.10.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/EGAD

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EGAD

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Old Source Packages for BioC 3.8 Source Archive