DelayedMatrixStats

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see DelayedMatrixStats.

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

DOI: 10.18129/B9.bioc.DelayedMatrixStats

Bioconductor version: 3.8

A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.

Author: Peter Hickey <peter.hickey at gmail.com>

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("DelayedMatrixStats")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("DelayedMatrixStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DelayedMatrixStats")

Overview of DelayedMatrixStats HTML R Script

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataRepresentation, Infrastructure, Software

Version 1.4.0

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License MIT + file LICENSE

Depends DelayedArray(>= 0.7.37)

Imports methods, matrixStats (>= 0.53.1), Matrix, S4Vectors(>= 0.17.5), IRanges, HDF5Array(>= 1.7.10), BiocParallel

System Requirements

URL https://github.com/PeteHaitch/DelayedMatrixStats

Bug Reports https://github.com/PeteHaitch/DelayedMatrixStats/issues

Suggests testthat, knitr, rmarkdown, covr, BiocStyle, microbenchmark, profmem

Linking To

Enhances

Depends On Me

Imports Me bsseq, dmrseq, minfi, scater, scran

Suggests Me DelayedArray

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DelayedMatrixStats_1.4.0.tar.gz

Windows Binary DelayedMatrixStats_1.4.0.zip

Mac OS X 10.11 (El Capitan) DelayedMatrixStats_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/DelayedMatrixStats

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DelayedMatrixStats

Bioc Package Browser https://code.bioconductor.org/browse/DelayedMatrixStats/

Package Short Url https://bioconductor.org/packages/DelayedMatrixStats/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.8 Source Archive