DSS
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see DSS.
Dispersion shrinkage for sequencing data
DOI: 10.18129/B9.bioc.DSS
Bioconductor version: 3.8
DSS is an R library performing differntial analysis for count-based sequencing data. It detectes differentially expressed genes (DEGs) from RNA-seq, and differentially methylated loci or regions (DML/DMRs) from bisulfite sequencing (BS-seq). The core of DSS is a new dispersion shrinkage method for estimating the dispersion parameter from Gamma-Poisson or Beta-Binomial distributions.
Author: Hao Wu <hao.wu at emory.edu>
Maintainer: Hao Wu <hao.wu at emory.edu>
citation("DSS")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DSS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DSS")
Details
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Follow Installation instructions to use this package in your R session.