DEGseq

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see DEGseq.

Identify Differentially Expressed Genes from RNA-seq data

Bioconductor version: 3.8

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

Author: Likun Wang <wanglk at hsc.pku.edu.cn> and Xi Wang <wang-xi05 at mails.tsinghua.edu.cn>.

Maintainer: Likun Wang <wanglk at hsc.pku.edu.cn>

Citation (from within R, enter citation("DEGseq")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("DEGseq")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEGseq")

DEGseq PDF R Script

Reference Manual PDF

NEWS Text

Version 1.36.1

In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)

License LGPL (>=2)

Depends R (>= 2.8.0), qvalue, methods

Imports graphics, grDevices, methods, stats, utils

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Follow Installation instructions to use this package in your R session.

Source Package DEGseq_1.36.1.tar.gz

Windows Binary DEGseq_1.36.1.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) DEGseq_1.36.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/DEGseq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DEGseq

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Old Source Packages for BioC 3.8 Source Archive