ChromHeatMap

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ChromHeatMap.

Heat map plotting by genome coordinate

Bioconductor version: 3.8

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner <tfrayner at gmail.com>

Citation (from within R, enter citation("ChromHeatMap")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ChromHeatMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChromHeatMap")

Plotting expression data with ChromHeatMap PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Software, Visualization

Version 1.36.0

In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)

License Artistic-2.0

Depends R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0)

Imports Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer, GenomicRanges

System Requirements

URL

Suggests ALL, hgu95av2.db

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChromHeatMap_1.36.0.tar.gz

Windows Binary ChromHeatMap_1.36.0.zip

Mac OS X 10.11 (El Capitan) ChromHeatMap_1.36.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ChromHeatMap

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChromHeatMap

Bioc Package Browser https://code.bioconductor.org/browse/ChromHeatMap/

Package Short Url https://bioconductor.org/packages/ChromHeatMap/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.8 Source Archive