CexoR
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see CexoR.
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Bioconductor version: 3.8
Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function (package 'skellam') is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Irreproducible discovery rate for overlapping peak-pairs across biological replicates is estimated using the package 'idr'.
Author: Pedro Madrigal <bioinformatics.engineer at gmail.com>
Maintainer: Pedro Madrigal <bioinformatics.engineer at gmail.com>
citation("CexoR")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CexoR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CexoR")
Details
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Follow Installation instructions to use this package in your R session.