BiocSklearn

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see BiocSklearn.

interface to python sklearn via Rstudio reticulate

Bioconductor version: 3.8

This package provides interfaces to selected sklearn elements, and demonstrates fault tolerant use of python modules requiring extensive iteration.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("BiocSklearn")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BiocSklearn")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocSklearn")

BiocSklearn overview PDF R Script

Reference Manual PDF

Version 1.4.0

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License Artistic-2.0

Depends R (>= 3.5.0), reticulate, methods, SummarizedExperiment, knitr

Imports BBmisc

System Requirements python (>= 2.7), sklearn, numpy, pandas, h5py

URL

Suggests testthat, restfulSE, HDF5Array

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Enhances

Depends On Me

Imports Me

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Follow Installation instructions to use this package in your R session.

Windows Binary BiocSklearn_1.4.0.zip

Mac OS X 10.11 (El Capitan) BiocSklearn_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/BiocSklearn

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocSklearn

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Old Source Packages for BioC 3.8 Source Archive