restfulSE

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see restfulSE.

Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface

Bioconductor version: 3.7

This package provides functions and classes to interface with remote data stores by operating on SummarizedExperiment-like objects.

Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]

Maintainer: Shweta Gopaulakrishnan <reshg at channing.harvard.edu>

Citation (from within R, enter citation("restfulSE")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("restfulSE")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("restfulSE")

restfulSE -- experiments with SE interface to remote HDF5 PDF R Script

Reference Manual PDF

NEWS Text

Version 1.2.3

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License Artistic-2.0

Imports utils, stats, methods, S4Vectors, Biobase, reshape2, AnnotationDbi, DBI, GO.db, rhdf5client, dplyr (>= 0.7.1), magrittr, bigrquery, ExperimentHub, AnnotationHub, rlang

System Requirements

URL

Suggests knitr, testthat, Rtsne, org.Mm.eg.db, org.Hs.eg.db, BiocStyle

Linking To

Enhances

Depends On Me tenXplore

Imports Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package restfulSE_1.2.3.tar.gz

Windows Binary restfulSE_1.2.3.zip

Mac OS X 10.11 (El Capitan) restfulSE_1.2.3.tgz

Source Repository git clone https://git.bioconductor.org/packages/restfulSE

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/restfulSE

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Old Source Packages for BioC 3.7 Source Archive