myvariant

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see myvariant.

Accesses MyVariant.info variant query and annotation services

Bioconductor version: 3.7

MyVariant.info is a comprehensive aggregation of variant annotation resources. myvariant is a wrapper for querying MyVariant.info services

Author: Adam Mark

Maintainer: Adam Mark, Chunlei Wu <cwu at scripps.edu>

Citation (from within R, enter citation("myvariant")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("myvariant")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("myvariant")

Using MyVariant.R PDF R Script

Reference Manual PDF

Version 1.10.0

In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)

License Artistic-2.0

Depends R (>= 3.2.1), VariantAnnotation

Imports httr, jsonlite, S4Vectors, Hmisc, plyr, magrittr, GenomeInfoDb

System Requirements

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Follow Installation instructions to use this package in your R session.

Windows Binary myvariant_1.10.0.zip

Mac OS X 10.11 (El Capitan) myvariant_1.10.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/myvariant

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/myvariant

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Old Source Packages for BioC 3.7 Source Archive