clusterSeq

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see clusterSeq.

Clustering of high-throughput sequencing data by identifying co-expression patterns

Bioconductor version: 3.7

Identification of clusters of co-expressed genes based on their expression across multiple (replicated) biological samples.

Author: Thomas J. Hardcastle & Irene Papatheodorou

Maintainer: Thomas J. Hardcastle <tjh48 at cam.ac.uk>

Citation (from within R, enter citation("clusterSeq")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("clusterSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterSeq")

Advanced baySeq analyses PDF R Script

Reference Manual PDF

Version 1.4.0

In Bioconductor since BioC 3.5 (R-3.4) (7 years)

License GPL-3

Depends R (>= 3.0.0), methods, BiocParallel, baySeq, graphics, stats, utils

Imports BiocGenerics

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Follow Installation instructions to use this package in your R session.

Windows Binary clusterSeq_1.4.0.zip

Mac OS X 10.11 (El Capitan) clusterSeq_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/clusterSeq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clusterSeq

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Old Source Packages for BioC 3.7 Source Archive