adaptest

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see adaptest.

Data-Adaptive Statistics for High-Dimensional Multiple Testing

DOI: 10.18129/B9.bioc.adaptest

Bioconductor version: 3.7

Data-adaptive test statistics represent a general methodology for performing multiple hypothesis testing on effects sizes while maintaining honest statistical inference when operating in high-dimensional settings (). The utilities provided here extend the use of this general methodology to many common data analytic challenges that arise in modern computational and genomic biology.

Author: Weixin Cai [aut, cre, cph], Nima Hejazi [aut], Alan Hubbard [ctb, ths]

Maintainer: Weixin Cai <wcai at berkeley.edu>

Citation (from within R, enter citation("adaptest")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("adaptest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("adaptest")

Data-Mining Biomarkers and High-Dimensional Testing HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, DimensionReduction, GeneExpression, Genetics, Microarray, MultipleComparison, Regression, Sequencing, Software

Version 1.0.0

In Bioconductor since BioC 3.7 (R-3.5) (6 years)

License GPL-2

Depends R (>= 3.5.0)

Imports origami (>= 1.0.0), tmle, calibrate, methods, graphics, stats, utils, SummarizedExperiment

System Requirements

URL https://github.com/wilsoncai1992/adaptest

Bug Reports https://github.com/wilsoncai1992/adaptest/issues

Suggests testthat, Matrix, SuperLearner, earth, gam, nnls, airway, rmarkdown, knitr, BiocStyle

Linking To

Enhances

Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package adaptest_1.0.0.tar.gz

Windows Binary adaptest_1.0.0.zip

Mac OS X 10.11 (El Capitan) adaptest_1.0.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/adaptest

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/adaptest

Package Short Url https://bioconductor.org/packages/adaptest/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.7 Source Archive