TSSi

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see TSSi.

Transcription Start Site Identification

DOI: 10.18129/B9.bioc.TSSi

Bioconductor version: 3.7

Identify and normalize transcription start sites in high-throughput sequencing data.

Author: Julian Gehring, Clemens Kreutz

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Citation (from within R, enter citation("TSSi")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TSSi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TSSi")

Introduction to the TSSi package: Identification of Transcription Start Sites PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Genetics, Preprocessing, RNASeq, Sequencing, Software

Version 1.26.0

In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)

License GPL-3

Depends R (>= 2.13.2)

Imports methods, BiocGenerics(>= 0.3.2), S4Vectors, Hmisc, minqa, stats, Biobase(>= 0.3.2), plyr, IRanges

System Requirements

URL

Suggests rtracklayer

Linking To

Enhances parallel

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TSSi_1.26.0.tar.gz

Windows Binary TSSi_1.26.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) TSSi_1.26.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/TSSi

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TSSi

Package Short Url https://bioconductor.org/packages/TSSi/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.7 Source Archive