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TFutils
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see TFutils.
TFutils
Bioconductor version: 3.7
Package to work with TF data.
Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]
Maintainer: Shweta Gopaulakrishnan <reshg at channing.harvard.edu>
Citation (from within R, enter
citation("TFutils")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TFutils")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TFutils") Reference Manual
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Details
biocViews
Software, Transcriptomics
Version
1.0.0
In Bioconductor since
BioC 3.7 (R-3.5) (6 years)
License
Artistic-2.0
Depends
R (>= 3.5.0)
Imports
methods, GenomicRanges, IRanges, S4Vectors, GSEABase, shiny, miniUI, data.table, dplyr, magrittr, AnnotationDbi, Rsamtools, GenomeInfoDb, GenomicFiles, AnnotationFilter, GenomicFeatures, Gviz, utils, stats, Biobase
System Requirements
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Suggests
knitr, DT, Homo.sapiens, GO.db, org.Hs.eg.db, ensembldb, EnsDb.Hsapiens.v75, testthat, BiocParallel, BiocStyle, SummarizedExperiment, UpSetR, ggplot2
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Follow Installation instructions to use this package in your R session.
Source Package
TFutils_1.0.0.tar.gz
Windows Binary
TFutils_1.0.0.zip
Mac OS X 10.11 (El Capitan)
TFutils_1.0.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/TFutils
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/TFutils
Package Short Url
https://bioconductor.org/packages/TFutils/
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