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Polyfit
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Polyfit.
Add-on to DESeq to improve p-values and q-values
Bioconductor version: 3.7
Polyfit is an add-on to the packages DESeq which ensures the p-value distribution is uniform over the interval [0, 1] for data satisfying the null hypothesis of no differential expression, and uses an adpated Storey-Tibshiran method to calculate q-values.
Author: Conrad Burden
Maintainer: Conrad Burden <conrad.burden at anu.edu.au>
citation("Polyfit")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Polyfit")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Polyfit")
Details
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Follow Installation instructions to use this package in your R session.