MetaCyto

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see MetaCyto.

MetaCyto: A package for meta-analysis of cytometry data

Bioconductor version: 3.7

This package provides functions for preprocessing, automated gating and meta-analysis of cytometry data. It also provides functions that facilitate the collection of cytometry data from the ImmPort database.

Author: Zicheng Hu, Chethan Jujjavarapu, Sanchita Bhattacharya, Atul J. Butte

Maintainer: Zicheng Hu <zicheng.hu at ucsf.edu>

Citation (from within R, enter citation("MetaCyto")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MetaCyto")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaCyto")

Vignette Title HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBasedAssays, CellBiology, Clustering, FlowCytometry, Preprocessing, Software, StatisticalMethod

Version 1.2.1

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License GPL (>= 2)

Depends R (>= 3.4)

Imports flowCore(>= 1.4), tidyr (>= 0.7), fastcluster, ggplot2, metafor, cluster, FlowSOM, grDevices, graphics, stats, utils

System Requirements

URL

Suggests knitr, dplyr

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaCyto_1.2.1.tar.gz

Windows Binary MetaCyto_1.2.1.zip

Mac OS X 10.11 (El Capitan) MetaCyto_1.2.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/MetaCyto

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaCyto

Bioc Package Browser https://code.bioconductor.org/browse/MetaCyto/

Package Short Url https://bioconductor.org/packages/MetaCyto/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.7 Source Archive