GenomicDataCommons

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see GenomicDataCommons.

NIH / NCI Genomic Data Commons Access

Bioconductor version: 3.7

Programmatically access the NIH / NCI Genomic Data Commons RESTful service.

Author: Martin Morgan [aut], Sean Davis [aut, cre]

Maintainer: Sean Davis <seandavi at gmail.com>

Citation (from within R, enter citation("GenomicDataCommons")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GenomicDataCommons")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicDataCommons")

Introduction to Accessing the NCI Genomic Data Commons HTML R Script

Reference Manual PDF

Version 1.4.3

In Bioconductor since BioC 3.5 (R-3.4) (7 years)

License Artistic-2.0

Depends R (>= 3.4.0), magrittr

Imports stats, httr, xml2, jsonlite, utils, lazyeval, readr, GenomicRanges, IRanges, dplyr, rappdirs, SummarizedExperiment, S4Vectors

System Requirements

Suggests BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools

Linking To

Enhances

Depends On Me

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Mac OS X 10.11 (El Capitan) GenomicDataCommons_1.4.3.tgz

Source Repository git clone https://git.bioconductor.org/packages/GenomicDataCommons

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenomicDataCommons

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Old Source Packages for BioC 3.7 Source Archive