ComplexHeatmap

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ComplexHeatmap.

Making Complex Heatmaps

Bioconductor version: 3.7

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("ComplexHeatmap")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComplexHeatmap")

1. Introduction to ComplexHeatmap package HTML R Script

2. Making a single heatmap HTML R Script

3. Making a list of Heatmaps HTML R Script

4. Heatmap Annotations HTML R Script

5. Heatmap and Annotation Legends HTML R Script

6. Heatmap Decoration HTML R Script

7. Interactive with Heatmaps HTML R Script

8. OncoPrint HTML R Script

9. More Examples HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Sequencing, Software, Visualization

Version 1.18.1

In Bioconductor since BioC 3.1 (R-3.2) (9 years)

License MIT + file LICENSE

Depends R (>= 3.1.2), methods, grid, graphics, stats, grDevices

Imports circlize (>= 0.4.1), GetoptLong, colorspace, RColorBrewer, GlobalOptions (>= 0.0.10)

System Requirements

URL https://github.com/jokergoo/ComplexHeatmap

Suggests testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust, dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster, dendextend (>= 1.0.1)

Linking To

Enhances

Depends On Me EnrichedHeatmap, recoup