CNORfeeder

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see CNORfeeder.

Integration of CellNOptR to add missing links

Bioconductor version: 3.7

This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods and uses information on physical interactions of proteins to guide and validate the integration of links.

Author: F.Eduati

Maintainer: F.Eduati <eduati at ebi.ac.uk>

Citation (from within R, enter citation("CNORfeeder")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CNORfeeder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORfeeder")

Main vignette:Playing with networks using CNORfeeder PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Bioinformatics, CellBasedAssays, CellBiology, NetworkInference, Proteomics, Software

Version 1.20.0

In Bioconductor since BioC 2.12 (R-3.0) (11 years)

License GPL-3

Depends R (>= 2.15.0), CellNOptR(>= 1.4.0), graph

Imports

System Requirements

URL

Suggests minet, catnet, Rgraphviz, RUnit, BiocGenerics, igraph

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CNORfeeder_1.20.0.tar.gz

Windows Binary CNORfeeder_1.20.0.zip

Mac OS X 10.11 (El Capitan) CNORfeeder_1.20.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CNORfeeder

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CNORfeeder

Package Short Url https://bioconductor.org/packages/CNORfeeder/

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Old Source Packages for BioC 3.7 Source Archive