BridgeDbR

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see BridgeDbR.

Code for using BridgeDb identifier mapping framework from within R

Bioconductor version: 3.7

Use BridgeDb functions and load identifier mapping databases in R.

Author: Christ Leemans <christleemans at gmail.com>, Egon Willighagen <egon.willighagen at gmail.com>, Anwesha Bohler <anweshabohler at gmail.com>, Lars Eijssen <l.eijssen at maastrichtuniversity.nl>

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>

Citation (from within R, enter citation("BridgeDbR")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BridgeDbR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BridgeDbR")

Tutorial HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, Cheminformatics, Metabolomics, Software

Version 1.14.0

In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)

License AGPL-3

Depends R (>= 3.3.0), rJava

Imports RCurl

System Requirements

URL https://github.com/bridgedb/BridgeDbR

Bug Reports https://github.com/egonw/BridgeDbR/issues

Suggests BiocStyle, knitr, rmarkdown, testthat

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BridgeDbR_1.14.0.tar.gz

Windows Binary BridgeDbR_1.14.0.zip

Mac OS X 10.11 (El Capitan) BridgeDbR_1.14.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/BridgeDbR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BridgeDbR

Package Short Url https://bioconductor.org/packages/BridgeDbR/

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Old Source Packages for BioC 3.7 Source Archive