traseR

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see traseR.

GWAS trait-associated SNP enrichment analyses in genomic intervals

Bioconductor version: 3.6

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

Author: Li Chen, Zhaohui S.Qin

Maintainer: li chen<li.chen at emory.edu>

Citation (from within R, enter citation("traseR")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("traseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("traseR")

Perform GWAS trait-associated SNP enrichment analyses in genomic intervals PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software

Version 1.8.0

In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)

License GPL

Depends R (>= 3.2.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19

Imports

System Requirements

URL

Suggests BiocStyle, RUnit, BiocGenerics

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package traseR_1.8.0.tar.gz

Windows Binary traseR_1.8.0.zip

Mac OS X 10.11 (El Capitan) traseR_1.8.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/traseR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/traseR

Package Short Url https://bioconductor.org/packages/traseR/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.6 Source Archive