sigPathway

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sigPathway.

Pathway Analysis

DOI: 10.18129/B9.bioc.sigPathway

Bioconductor version: 3.6

Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)

Author: Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)

Maintainer: Weil Lai <wlai at alum.mit.edu>

Citation (from within R, enter citation("sigPathway")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("sigPathway")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigPathway")

sigPathway PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, MultipleComparison, Software

Version 1.46.0

In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)

License GPL-2

Depends R (>= 2.10)

Imports

System Requirements

URL http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102 http://www.chip.org/~ppark/Supplements/PNAS05.html

Suggests hgu133a.db(>= 1.10.0), XML (>= 1.6-3), AnnotationDbi(>= 1.3.12)

Linking To

Enhances

Depends On Me tRanslatome

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sigPathway_1.46.0.tar.gz

Windows Binary sigPathway_1.46.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) sigPathway_1.46.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/sigPathway

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sigPathway

Package Short Url https://bioconductor.org/packages/sigPathway/

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Old Source Packages for BioC 3.6 Source Archive