plier

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see plier.

Implements the Affymetrix PLIER algorithm

Bioconductor version: 3.6

The PLIER (Probe Logarithmic Error Intensity Estimate) method produces an improved signal by accounting for experimentally observed patterns in probe behavior and handling error at the appropriately at low and high signal values.

Author: Affymetrix Inc., Crispin J Miller, PICR

Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>

Citation (from within R, enter citation("plier")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("plier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

README Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Software

Version 1.48.0

In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)

License GPL (>= 2)

Depends R (>= 2.0), methods

Imports affy, Biobase, methods

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me piano

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package plier_1.48.0.tar.gz

Windows Binary plier_1.48.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) plier_1.48.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/plier

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plier

Package Short Url https://bioconductor.org/packages/plier/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.6 Source Archive