pdInfoBuilder

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see pdInfoBuilder.

Platform Design Information Package Builder

Bioconductor version: 3.6

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho

Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com>

Citation (from within R, enter citation("pdInfoBuilder")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("pdInfoBuilder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pdInfoBuilder")

Building Annotation Packages with pdInfoBuilder for Use with the oligo Package PDF

PDInfo Package Building Affymetrix Mapping Chips PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, Infrastructure, Software

Version 1.42.0

In Bioconductor since BioC 2.0 (R-2.5) (17 years)

License Artistic-2.0

Depends R (>= 3.2.0), methods, Biobase(>= 2.27.3), RSQLite (>= 1.0.0), affxparser(>= 1.39.4), oligo(>= 1.31.5)

Imports Biostrings(>= 2.35.12), BiocGenerics(>= 0.13.11), DBI (>= 0.3.1), IRanges(>= 2.1.43), oligoClasses(>= 1.29.6), S4Vectors(>= 0.5.22)

System Requirements

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pdInfoBuilder_1.42.0.tar.gz

Windows Binary pdInfoBuilder_1.42.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) pdInfoBuilder_1.42.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/pdInfoBuilder

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pdInfoBuilder

Package Short Url https://bioconductor.org/packages/pdInfoBuilder/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.6 Source Archive