msmsEDA

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see msmsEDA.

Exploratory Data Analysis of LC-MS/MS data by spectral counts

Bioconductor version: 3.6

Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.

Author: Josep Gregori, Alex Sanchez, and Josep Villanueva

Maintainer: Josep Gregori <josep.gregori at gmail.com>

Citation (from within R, enter citation("msmsEDA")):

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("msmsEDA")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msmsEDA")

msmsEDA: Batch effects detection in LC-MSMS experiments PDF R Script

Reference Manual PDF

Version 1.16.0

In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)

License GPL-2

Depends R (>= 3.0.1), MSnbase

Imports MASS, gplots, RColorBrewer

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me msmsTests

Imports Me

Suggests Me Harman, RforProteomics

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package msmsEDA_1.16.0.tar.gz

Windows Binary msmsEDA_1.16.0.zip

Mac OS X 10.11 (El Capitan) msmsEDA_1.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/msmsEDA

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/msmsEDA

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Old Source Packages for BioC 3.6 Source Archive