motifRG

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see motifRG.

A package for discriminative motif discovery, designed for high throughput sequencing dataset

DOI: 10.18129/B9.bioc.motifRG

Bioconductor version: 3.6

Tools for discriminative motif discovery using regression methods

Author: Zizhen Yao

Maintainer: Zizhen Yao <yzizhen at fhcrc.org>

Citation (from within R, enter citation("motifRG")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("motifRG")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("motifRG")

motifRG: regression-based discriminative motif discovery PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews MotifDiscovery, Software, Transcription

Version 1.22.0

In Bioconductor since BioC 2.10 (R-2.15) (12 years)

License Artistic-2.0

Depends R (>= 2.15), Biostrings(>= 2.26), IRanges, seqLogo, parallel, methods, grid, graphics, BSgenome, XVector, BSgenome.Hsapiens.UCSC.hg19

Imports Biostrings, IRanges, seqLogo, parallel, methods, grid, graphics, XVector

System Requirements

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package motifRG_1.22.0.tar.gz

Windows Binary motifRG_1.22.0.zip

Mac OS X 10.11 (El Capitan) motifRG_1.22.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/motifRG

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/motifRG

Package Short Url https://bioconductor.org/packages/motifRG/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.6 Source Archive