miRsponge

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see miRsponge (renamed to miRspongeR) .

Identification and analysis of miRNA sponge interaction networks and modules

DOI: 10.18129/B9.bioc.miRsponge

Bioconductor version: 3.6

This package provides several functions to study miRNA sponge (also called ceRNA or miRNA decoy), including popular methods for identifying miRNA sponge interactions, and the integrative method to integrate miRNA sponge interactions from different methods, as well as the functions to validate miRNA sponge interactions, and infer miRNA sponge modules, conduct enrichment analysis of modules, and conduct survival analysis of modules.

Author: Junpeng Zhang

Maintainer: Junpeng Zhang <zhangjunpeng_411 at yahoo.com>

Citation (from within R, enter citation("miRsponge")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("miRsponge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiomedicalInformatics, GeneExpression, Microarray, NetworkEnrichment, Software, Survival

Version 1.2.0

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License GPL-3

Depends R (>= 3.4.1)

Imports corpcor, parallel, igraph, ProNet, clusterProfiler, ReactomePA, DOSE, survival, grDevices, graphics, stats, varhandle, utils

System Requirements

URL

Suggests BiocStyle, knitr, rmarkdown, testthat, org.Hs.eg.db

Linking To

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Depends On Me

Imports Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRsponge_1.2.0.tar.gz

Windows Binary miRsponge_1.2.0.zip

Mac OS X 10.11 (El Capitan) miRsponge_1.2.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/miRsponge

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRsponge

Package Short Url https://bioconductor.org/packages/miRsponge/

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Old Source Packages for BioC 3.6 Source Archive