esetVis

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see esetVis.

Visualizations of expressionSet Bioconductor object

Bioconductor version: 3.6

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

Author: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Maintainer: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Citation (from within R, enter citation("esetVis")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("esetVis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataRepresentation, DimensionReduction, Pathways, PrincipalComponent, Software, Visualization

Version 1.4.0

In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)

License GPL-3

Depends

Imports mpm, hexbin, Rtsne, MLP, grid, Biobase, MASS, stats, utils, grDevices

System Requirements

URL

Suggests ggplot2, ggvis, rbokeh, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package esetVis_1.4.0.tar.gz

Windows Binary esetVis_1.4.0.zip

Mac OS X 10.11 (El Capitan) esetVis_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/esetVis

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/esetVis

Package Short Url https://bioconductor.org/packages/esetVis/

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Old Source Packages for BioC 3.6 Source Archive