SC3

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see SC3.

Single-Cell Consensus Clustering

DOI: 10.18129/B9.bioc.SC3

Bioconductor version: 3.6

A tool for unsupervised clustering and analysis of single cell RNA-Seq data.

Author: Vladimir Kiselev

Maintainer: Vladimir Kiselev <vladimir.yu.kiselev at gmail.com>

Citation (from within R, enter citation("SC3")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("SC3")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, Clustering, DataRepresentation, DifferentialExpression, DimensionReduction, GUI, RNASeq, SingleCell, Software, SupportVectorMachine, Transcription, Transcriptomics, Visualization

Version 1.7.7

In Bioconductor since BioC 3.3 (R-3.3) (8 years)

License GPL-3

Depends R (>= 3.3)

Imports graphics, stats, utils, methods, e1071, parallel, foreach, doParallel, doRNG, shiny, ggplot2, pheatmap (>= 1.0.8), ROCR, robustbase, rrcov, cluster, WriteXLS, Rcpp (>= 0.11.1), SummarizedExperiment, SingleCellExperiment, BiocGenerics, S4Vectors

System Requirements

URL https://github.com/hemberg-lab/SC3

Bug Reports https://support.bioconductor.org/t/sc3/

Suggests knitr, rmarkdown, mclust, scater

Linking To Rcpp, RcppArmadillo

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SC3_1.7.7.tar.gz

Windows Binary SC3_1.7.7.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) SC3_1.7.7.tgz

Source Repository git clone https://git.bioconductor.org/packages/SC3

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SC3

Package Short Url https://bioconductor.org/packages/SC3/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.6 Source Archive