RCyjs

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see RCyjs.

Display and manipulate graphs in cytoscape.js

Bioconductor version: 3.6

Interactive viewing and exploration of graphs, connecting R to Cytoscape.js.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at systemsbiology.org>

Citation (from within R, enter citation("RCyjs")):

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("RCyjs")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCyjs")

RCyjs PDF R Script

Reference Manual PDF

README Text

NEWS Text

Version 1.10.0

In Bioconductor since BioC 3.1 (R-3.2) (9 years)

License GPL-2

Depends R (>= 3.2.0), BrowserViz(>= 1.1.7), graph(>= 1.44.0)

Imports methods, httpuv (>= 1.3.2), Rcpp (>= 0.11.5), jsonlite (>= 0.9.15), BiocGenerics, igraph, base64enc

System Requirements

Suggests RUnit, BiocStyle, RefNet

Linking To

Enhances

Depends On Me

Imports Me

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Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package RCyjs_1.10.0.tar.gz

Windows Binary

Mac OS X 10.11 (El Capitan) RCyjs_1.10.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/RCyjs

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RCyjs

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Old Source Packages for BioC 3.6 Source Archive