ProteomicsAnnotationHubData

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ProteomicsAnnotationHubData .

Transform public proteomics data resources into Bioconductor Data Structures

DOI: 10.18129/B9.bioc.ProteomicsAnnotationHubData

Bioconductor version: 3.6

These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

Author: Gatto Laurent [aut, cre], Sonali Arora [aut]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("ProteomicsAnnotationHubData")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ProteomicsAnnotationHubData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Proteomics, Software

Version 1.8.0

In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)

License Artistic-2.0

Depends AnnotationHub(>= 2.1.45), AnnotationHubData

Imports mzR(>= 2.3.2), MSnbase, Biostrings, GenomeInfoDb, utils, Biobase, BiocInstaller, RCurl

System Requirements

URL https://github.com/lgatto/ProteomicsAnnotationHubData

Bug Reports https://github.com/lgatto/ProteomicsAnnotationHubData/issues

Suggests knitr, BiocStyle, rmarkdown, testthat

Linking To

Enhances

Depends On Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ProteomicsAnnotationHubData_1.8.0.tar.gz

Windows Binary ProteomicsAnnotationHubData_1.8.0.zip

Mac OS X 10.11 (El Capitan) ProteomicsAnnotationHubData_1.8.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ProteomicsAnnotationHubData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ProteomicsAnnotationHubData

Package Short Url https://bioconductor.org/packages/ProteomicsAnnotationHubData/

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Old Source Packages for BioC 3.6 Source Archive