PICS

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see PICS.

Probabilistic inference of ChIP-seq

Bioconductor version: 3.6

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <rsautera at fhcrc.org>

Citation (from within R, enter citation("PICS")):

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("PICS")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")

The PICS users guide PDF R Script

Reference Manual PDF

NEWS Text

Version 2.22.0

In Bioconductor since BioC 2.6 (R-2.11) (14 years)

License Artistic-2.0

Depends R (>= 2.14.0), BiocGenerics(>= 0.1.3)

Imports methods, stats4, IRanges, GenomicRanges, graphics, grDevices, stats, Rsamtools, GenomicAlignments, S4Vectors

System Requirements GSL (GNU Scientific Library)

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Suggests ShortRead, rtracklayer, parallel

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Follow Installation instructions to use this package in your R session.

Source Package PICS_2.22.0.tar.gz

Windows Binary PICS_2.22.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) PICS_2.22.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/PICS

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PICS

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Old Source Packages for BioC 3.6 Source Archive